Informatics
Instrumentation
Genomics/Proteomics

Project: UBDA: Universal Bio-signature Detection Array

Champion: Jenni Weeks

We have developed a custom sequence-independent microarray designed to serve as a universal detection system for biological warfare threats and pathogens that may affect humans and agriculture. The overall goal is to produce a field deployable microarray that is universal and capable of distinguishing all potential bio-weapon infectious agents and naturally occuring and evolving pathogens. Every pathogen contains a unique genome which in turn will produce a unique bio-signature when hybridized to the array. By comparing an unknown bio-signature to our database of known bio-signatures, we will potential by able to identify any potential pathogen threat, isolated or in a host.

Figure 1: Image of UBDA hybridized with human genomic DNA

Figure 2: Scatter plot of UBDA signal intensities. Raw signals were corrected for background, and probe ids 1-32000 (out of 385K) were plotted to examine the dynamic range at the indicated scanning intensities

Related Publications

Organism identification using a genome sequence-independent universal microarray probe set.
Belosludtsev YY, Bowerman D, Weil R, Marthandan N, Balog R, Luebke K, Lawson J, Johnston SA, Lyons CR, Obrien K, Garner HR, Powdrill TF. Biotechniques. 2004 Oct;37(4):654-8, 660